◆发表论文
主要代表性论文：
[1] Yong-Fang Yao, Qiu-Xia Dai, Jing Li, Qing-Yong Ni, Ming-Wang Zhang, Huai-Liang Xu*. Genetic diversity and differentiation of the rhesus macaque (Macaca mulatta) population in western Sichuan, China, based on the second exon of the major histocompatibility complex class II DQB (MhcMamu-DQB1) alleles. BMC Evolutionary Biology, 2014, 14:130. doi:10.1186/1471-2148-14-130，IF=3.285；通迅作者。
[2]Junsong Zhao，Yongfang Yao，Diyan Li，Huaming Xu，Jiayun Wu，Anxiang Wen，Meng Xie，Qingyong Ni，Mingwang Zhang，Guangneng Peng，Huailiang Xu*. Characterization of the Gut Microbiota in Six Geographical Populations of Chinese Rhesus Macaques (Macaca mulatta), Implying an Adaptation to High-Altitude Environment. Microbial Ecology, 2018，（14）：1-13, doi：10.1007/s00248-018-1146-8，IF=3.68；通迅作者。
Peng Gu, Wei Liu, Yong-fang Yao, Qing-yong Ni, Ming-wang Zhang, Di-yan Li, and Huai-liang Xu*. Evidence of adaptive evolution of alpine pheasants to high-altitude environment from mitogenomic perspective. Mitochondrial DNA, 2015, 27（1）：455-462，IF=1.70；通迅作者。
[3] Yao Yongfang, Zhao Jingjing, Dai Qiuxia, Li Jiayi, Zhou Liang, Wang Yanting, Ni Qingyong, Zhang Mingwang, Xu Huailiang*. Identification and characterization of the major histocompatibility complex class II DQB (MhcMath-DQB1) alleles in Tibetan macaques (Macaca thibetana). Tissue Antigens, 2013, 82: 113–121. （通讯作者）.
[4] Liu Wei, Yao Yongfang, Zhou Liang, Ni Qingyong, Xu Huailiang*. Evolutionary analysis of the short-type peptidoglycan-recognition protein gene (PGLYRP1) in primates Genet. Mol. Res., 2013,12（1）：453-462.（通讯作者）.
[5] Li Diyan, Xu Huailiang, Trask Jessica Satkoski, Zhu Qing, Cheng Anchun, Smith David Glenn, George Debbie, Zhang Long. Genetic diversity and population structure in wild Sichuan rhesus Macaques. Mol Biol Rep. 2013, 40(4):3033-3041.（并列第一作者）.
[6] Yao Yongfang, Zhong Lijing, Liu Bofeng, Li Jiayi, Ni Qingyong, Xu Huailiang. Genetic variation between two Tibetan macaque (Macaca thibetana) populations in the eastern China based on mitochondrial DNA control region sequences. Mitochondrial DNA, 2013; 24(3): 267–275.（通讯作者）.
[7] Fan Xinyu, Yu Li, Xu Huailiang, Li Ying. Multiple intron gain and loss events occurred during the evolution of Cenp-A gene. Chin Sci Bull, 58 (18): 2174-2178.（通讯作者）.
[8] Zhong Lijing, Zhang Mingwang, Yao Yongfang, Ni Qingyong, Mu Jun, Li Chongqing, Xu Huailiang. Genetic diversity of two Tibetan macaque (Macaca thibetana) populations from Guizhou and Yunnan in China based on mitochondrial DNA D-loop sequences. Genes Genom. Doi: 10.1007/s13258-012-0048-2.（通讯作者）.
[9] Huang Ying, Yao Yongfang, Li Yan, Ni Qingyong, Zhang Shuanling, Liu Wei, Zhou Liang, Xu Huailiang. Identification and Molecular Evolutionary Analysis of TLR5 Gene from the Tibetan macaque (Macaca thibetana). Genes & Genomics，2012, 34：423-428（通讯作者）.
[10] Li Diyan，Xu Huailiang, Smith David Glenn, Cheng Anchun et al. Phylogenetic Analysis of Chinese Rhesus Macaques (Macaca mulatta) Based on Mitochondrial Control Region Sequences. American Journal of Primatology,2011,73:883–895.（并列第一作者）.
[11] Qian Wenfeng, He Xionglei, Chan Edwin, Xu Huailiang, and Zhang Jianzhi.Measuring the evolutionary rate of protein-protein interaction. Proc Natl Acad Sci USA. 2011, 108 (21): 8725-8730.
[12] Zhao Huabin, Yang Jian-Rong, Xu Huailiang and Zhang Jianzhi. Pseudogenization of the umami taste receptor gene Tas1r1 in the giant panda coincided with its dietary switch to bamboo. Molecular biology and evolution, 2010,27(12):2669-2673.
[13] 李佳薏，姚永芳，周亮，徐怀亮. 藏酋猴Mhc-DPB1基因外显子2多态性.遗传. 2012，34(11）:1417-1426.
[14] 徐怀亮，李地艳，姚永芳等. 四川地区猕猴线粒体DNA控制区遗传多样性及其种群遗传结构. 兽类学报，2010,30（3）：247-255.
[15] 徐怀亮，汪宴廷，姚永芳等. 猕猴MHC-DPB1基因外显子2多态性研究.遗传. 2010，32(6）:588-598.
[16] 徐怀亮，汪宴廷，姚永芳，倪庆永. 藏酋猴毛干DNA的3种提取方法. 东北林业大学学报，2010，38（2）：58-61.
[17] 徐怀亮，姚永芳，朱庆. 大熊猫苦味受体T2R2基因的克隆与序列分析. 兽类学报, 2010，30（1）：99-104.